Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs1122677 | chr9:15289941 | C/T | 1.44E-6 | 113 | 48.05 | 42.33 | 38.33 | KM Plot |
THYM | rs11236294 | chr11:74739934 | G/T | 0.000115 | 113 | 38.33 | 42.73 | 36.4 | KM Plot |
THYM | rs11236296 | chr11:74747058 | C/T | 2.42E-5 | 110 | 38.33 | 42.25 | 35 | KM Plot |
THYM | rs11236313 | chr11:74777798 | A/G | 1.68E-5 | 109 | 40.67 | 38.83 | 50.1 | KM Plot |
THYM | rs113102763 | chr1:45940130 | C/T | 2.69E-6 | 112 | 39.75 | 41.77 | 14.47 | KM Plot |
THYM | rs113798922 | chr1:45804424 | T/G | 3.08E-6 | 111 | 14.47 | 38.33 | 42.9 | KM Plot |
THYM | rs113915588 | chr2:73634622 | T/TA | 7.81E-8 | 108 | 37.63 | 46.23 | 34.83 | KM Plot |
THYM | rs11445897 | chr19:53943959 | G/GC | 4.37E-8 | 110 | 12.98 | 37.13 | 46.27 | KM Plot |
THYM | rs114918399 | chr9:97011794 | G/T | 0 | 111 | 38.58 | 61.78 | 0.13 | KM Plot |
THYM | rs115848784 | chr7:76127071 | G/T | 2.25E-5 | 110 | 31.48 | 45.87 | 38.33 | KM Plot |
THYM | rs11636514 | chr15:63240993 | G/C | 6.92E-5 | 110 | 38.58 | 50.13 | 18 | KM Plot |
THYM | rs11639856 | chr16:24788645 | A/T | 4.32E-5 | 113 | 50.1 | 27.57 | 49.4 | KM Plot |
THYM | rs11641603 | chr16:24793432 | C/T | 4.11E-5 | 113 | 46.07 | 28.8 | 50.1 | KM Plot |
THYM | rs11642954 | chr16:24824248 | G/A | 4.75E-5 | 112 | 46.43 | 30.03 | 50.1 | KM Plot |
THYM | rs11647120 | chr16:24819806 | A/G | 4.32E-5 | 113 | 49.4 | 27.57 | 50.1 | KM Plot |